biobb_dna
Introduction & installation
API Documentation
Command Line Documentation
Changelog
biobb_dna
Index
Index
A
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B
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C
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D
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F
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G
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H
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I
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L
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M
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P
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S
A
average_stiffness() (in module stiffness.average_stiffness)
AverageStiffness (class in stiffness.average_stiffness)
B
backbone.bipopulations
module
backbone.canonicalag
module
backbone.puckering
module
basepair_stiffness() (in module stiffness.basepair_stiffness)
bayes_factor_criteria() (dna.dna_bimodality.HelParBimodality method)
biobb_canal() (in module curvesplus.biobb_canal)
biobb_canion() (in module curvesplus.biobb_canion)
biobb_curves() (in module curvesplus.biobb_curves)
BIPopulations (class in backbone.bipopulations)
bipopulations() (in module backbone.bipopulations)
BPStiffness (class in stiffness.basepair_stiffness)
C
Canal (class in curvesplus.biobb_canal)
canal_unzip() (in module curvesplus.canal_unzip)
CanalUnzip (class in curvesplus.canal_unzip)
Canion (class in curvesplus.biobb_canion)
CanonicalAG (class in backbone.canonicalag)
canonicalag() (in module backbone.canonicalag)
check_alpha_gamma() (backbone.canonicalag.CanonicalAG method)
check_puckering() (backbone.puckering.Puckering method)
circlineal() (interbp_correlations.interbpcorr.InterBasePairCorrelation static method)
(interbp_correlations.interhpcorr.InterHelParCorrelation static method)
(intrabp_correlations.intrabpcorr.IntraBasePairCorrelation static method)
(intrabp_correlations.intrahpcorr.IntraHelParCorrelation static method)
circular() (interbp_correlations.interbpcorr.InterBasePairCorrelation static method)
(interbp_correlations.interhpcorr.InterHelParCorrelation static method)
(interbp_correlations.interseqcorr.InterSequenceCorrelation static method)
(intrabp_correlations.intrabpcorr.IntraBasePairCorrelation static method)
(intrabp_correlations.intrahpcorr.IntraHelParCorrelation static method)
(intrabp_correlations.intraseqcorr.IntraSequenceCorrelation static method)
create_curvesplus_folder() (curvesplus.biobb_curves.Curves method)
Curves (class in curvesplus.biobb_curves)
curvesplus.biobb_canal
module
curvesplus.biobb_canion
module
curvesplus.biobb_curves
module
curvesplus.canal_unzip
module
D
dna.dna_averages
module
dna.dna_bimodality
module
dna.dna_timeseries
module
dna.dna_timeseries_unzip
module
dna_averages() (in module dna.dna_averages)
dna_bimodality() (in module dna.dna_bimodality)
dna_timeseries() (in module dna.dna_timeseries)
dna_timeseries_unzip() (in module dna.dna_timeseries_unzip)
DnaTimeseriesUnzip (class in dna.dna_timeseries_unzip)
F
fit_to_model() (dna.dna_bimodality.HelParBimodality method)
fix_angles() (backbone.canonicalag.CanonicalAG method)
(backbone.puckering.Puckering method)
G
get_angles_difference() (backbone.bipopulations.BIPopulations method)
get_corr_method() (interbp_correlations.interhpcorr.InterHelParCorrelation method)
(intrabp_correlations.intrahpcorr.IntraHelParCorrelation method)
get_xlabels() (backbone.bipopulations.BIPopulations method)
(backbone.canonicalag.CanonicalAG method)
(backbone.puckering.Puckering method)
H
helguero_theorem() (dna.dna_bimodality.HelParBimodality method)
HelParAverages (class in dna.dna_averages)
HelParBimodality (class in dna.dna_bimodality)
HelParTimeSeries (class in dna.dna_timeseries)
I
InterBasePairCorrelation (class in interbp_correlations.interbpcorr)
interbp_correlations.interbpcorr
module
interbp_correlations.interhpcorr
module
interbp_correlations.interseqcorr
module
interbpcorr() (in module interbp_correlations.interbpcorr)
InterHelParCorrelation (class in interbp_correlations.interhpcorr)
interhpcorr() (in module interbp_correlations.interhpcorr)
interseqcorr() (in module interbp_correlations.interseqcorr)
InterSequenceCorrelation (class in interbp_correlations.interseqcorr)
IntraBasePairCorrelation (class in intrabp_correlations.intrabpcorr)
intrabp_correlations.intrabpcorr
module
intrabp_correlations.intrahpcorr
module
intrabp_correlations.intraseqcorr
module
intrabpcorr() (in module intrabp_correlations.intrabpcorr)
IntraHelParCorrelation (class in intrabp_correlations.intrahpcorr)
intrahpcorr() (in module intrabp_correlations.intrahpcorr)
intraseqcorr() (in module intrabp_correlations.intraseqcorr)
IntraSequenceCorrelation (class in intrabp_correlations.intraseqcorr)
L
launch() (backbone.bipopulations.BIPopulations method)
(backbone.canonicalag.CanonicalAG method)
(backbone.puckering.Puckering method)
(curvesplus.biobb_canal.Canal method)
(curvesplus.biobb_canion.Canion method)
(curvesplus.biobb_curves.Curves method)
(curvesplus.canal_unzip.CanalUnzip method)
(dna.dna_averages.HelParAverages method)
(dna.dna_bimodality.HelParBimodality method)
(dna.dna_timeseries.HelParTimeSeries method)
(dna.dna_timeseries_unzip.DnaTimeseriesUnzip method)
(interbp_correlations.interbpcorr.InterBasePairCorrelation method)
(interbp_correlations.interhpcorr.InterHelParCorrelation method)
(interbp_correlations.interseqcorr.InterSequenceCorrelation method)
(intrabp_correlations.intrabpcorr.IntraBasePairCorrelation method)
(intrabp_correlations.intrahpcorr.IntraHelParCorrelation method)
(intrabp_correlations.intraseqcorr.IntraSequenceCorrelation method)
(stiffness.average_stiffness.AverageStiffness method)
(stiffness.basepair_stiffness.BPStiffness method)
M
main() (in module backbone.bipopulations)
(in module backbone.canonicalag)
(in module backbone.puckering)
(in module curvesplus.biobb_canal)
(in module curvesplus.biobb_canion)
(in module curvesplus.biobb_curves)
(in module curvesplus.canal_unzip)
(in module dna.dna_averages)
(in module dna.dna_bimodality)
(in module dna.dna_timeseries)
(in module dna.dna_timeseries_unzip)
(in module interbp_correlations.interbpcorr)
(in module interbp_correlations.interhpcorr)
(in module interbp_correlations.interseqcorr)
(in module intrabp_correlations.intrabpcorr)
(in module intrabp_correlations.intrahpcorr)
(in module intrabp_correlations.intraseqcorr)
(in module stiffness.average_stiffness)
(in module stiffness.basepair_stiffness)
module
backbone.bipopulations
backbone.canonicalag
backbone.puckering
curvesplus.biobb_canal
curvesplus.biobb_canion
curvesplus.biobb_curves
curvesplus.canal_unzip
dna.dna_averages
dna.dna_bimodality
dna.dna_timeseries
dna.dna_timeseries_unzip
interbp_correlations.interbpcorr
interbp_correlations.interhpcorr
interbp_correlations.interseqcorr
intrabp_correlations.intrabpcorr
intrabp_correlations.intrahpcorr
intrabp_correlations.intraseqcorr
stiffness.average_stiffness
stiffness.basepair_stiffness
P
Puckering (class in backbone.puckering)
puckering() (in module backbone.puckering)
S
stiffness.average_stiffness
module
stiffness.basepair_stiffness
module