Index

A

average_stiffness() (in module stiffness.average_stiffness)

AverageStiffness (class in stiffness.average_stiffness)

B

backbone.bipopulations module backbone.canonicalag module backbone.puckering module basepair_stiffness() (in module stiffness.basepair_stiffness)

bayes_factor_criteria() (dna.dna_bimodality.HelParBimodality method) biobb_canal() (in module curvesplus.biobb_canal) biobb_canion() (in module curvesplus.biobb_canion) biobb_curves() (in module curvesplus.biobb_curves) BIPopulations (class in backbone.bipopulations) bipopulations() (in module backbone.bipopulations) BPStiffness (class in stiffness.basepair_stiffness)

C

Canal (class in curvesplus.biobb_canal) Canion (class in curvesplus.biobb_canion) CanonicalAG (class in backbone.canonicalag) canonicalag() (in module backbone.canonicalag) check_alpha_gamma() (backbone.canonicalag.CanonicalAG method) check_puckering() (backbone.puckering.Puckering method) circlineal() (interbp_correlations.interbpcorr.InterBasePairCorrelation static method) (interbp_correlations.interhpcorr.InterHelParCorrelation static method) (intrabp_correlations.intrabpcorr.IntraBasePairCorrelation static method) (intrabp_correlations.intrahpcorr.IntraHelParCorrelation static method) circular() (interbp_correlations.interbpcorr.InterBasePairCorrelation static method) (interbp_correlations.interhpcorr.InterHelParCorrelation static method) (interbp_correlations.interseqcorr.InterSequenceCorrelation static method) (intrabp_correlations.intrabpcorr.IntraBasePairCorrelation static method) (intrabp_correlations.intrahpcorr.IntraHelParCorrelation static method) (intrabp_correlations.intraseqcorr.IntraSequenceCorrelation static method)

Curves (class in curvesplus.biobb_curves) curvesplus.biobb_canal module curvesplus.biobb_canion module curvesplus.biobb_curves module

D

dna.dna_averages module dna.dna_bimodality module

dna.dna_timeseries module dna_averages() (in module dna.dna_averages) dna_bimodality() (in module dna.dna_bimodality) dna_timeseries() (in module dna.dna_timeseries)

F

fit_to_model() (dna.dna_bimodality.HelParBimodality method)

fix_angles() (backbone.canonicalag.CanonicalAG method) (backbone.puckering.Puckering method)

G

get_angles_difference() (backbone.bipopulations.BIPopulations method) get_corr_method() (interbp_correlations.interhpcorr.InterHelParCorrelation method) (intrabp_correlations.intrahpcorr.IntraHelParCorrelation method)

get_xlabels() (backbone.bipopulations.BIPopulations method) (backbone.canonicalag.CanonicalAG method) (backbone.puckering.Puckering method)

H

helguero_theorem() (dna.dna_bimodality.HelParBimodality method) HelParAverages (class in dna.dna_averages)

HelParBimodality (class in dna.dna_bimodality) HelParTimeSeries (class in dna.dna_timeseries)

I

InterBasePairCorrelation (class in interbp_correlations.interbpcorr) interbp_correlations.interbpcorr module interbp_correlations.interhpcorr module interbp_correlations.interseqcorr module interbpcorr() (in module interbp_correlations.interbpcorr) InterHelParCorrelation (class in interbp_correlations.interhpcorr) interhpcorr() (in module interbp_correlations.interhpcorr) interseqcorr() (in module interbp_correlations.interseqcorr) InterSequenceCorrelation (class in interbp_correlations.interseqcorr)

IntraBasePairCorrelation (class in intrabp_correlations.intrabpcorr) intrabp_correlations.intrabpcorr module intrabp_correlations.intrahpcorr module intrabp_correlations.intraseqcorr module intrabpcorr() (in module intrabp_correlations.intrabpcorr) IntraHelParCorrelation (class in intrabp_correlations.intrahpcorr) intrahpcorr() (in module intrabp_correlations.intrahpcorr) intraseqcorr() (in module intrabp_correlations.intraseqcorr) IntraSequenceCorrelation (class in intrabp_correlations.intraseqcorr)

L

launch() (backbone.bipopulations.BIPopulations method) (backbone.canonicalag.CanonicalAG method) (backbone.puckering.Puckering method) (curvesplus.biobb_canal.Canal method) (curvesplus.biobb_canion.Canion method) (curvesplus.biobb_curves.Curves method) (dna.dna_averages.HelParAverages method) (dna.dna_bimodality.HelParBimodality method) (dna.dna_timeseries.HelParTimeSeries method) (interbp_correlations.interbpcorr.InterBasePairCorrelation method) (interbp_correlations.interhpcorr.InterHelParCorrelation method) (interbp_correlations.interseqcorr.InterSequenceCorrelation method) (intrabp_correlations.intrabpcorr.IntraBasePairCorrelation method) (intrabp_correlations.intrahpcorr.IntraHelParCorrelation method) (intrabp_correlations.intraseqcorr.IntraSequenceCorrelation method) (stiffness.average_stiffness.AverageStiffness method) (stiffness.basepair_stiffness.BPStiffness method)

M

main() (in module backbone.bipopulations) (in module backbone.canonicalag) (in module backbone.puckering) (in module curvesplus.biobb_canal) (in module curvesplus.biobb_canion) (in module curvesplus.biobb_curves) (in module dna.dna_averages) (in module dna.dna_bimodality) (in module dna.dna_timeseries) (in module interbp_correlations.interbpcorr) (in module interbp_correlations.interhpcorr) (in module interbp_correlations.interseqcorr) (in module intrabp_correlations.intrabpcorr) (in module intrabp_correlations.intrahpcorr) (in module intrabp_correlations.intraseqcorr) (in module stiffness.average_stiffness) (in module stiffness.basepair_stiffness)

module backbone.bipopulations backbone.canonicalag backbone.puckering curvesplus.biobb_canal curvesplus.biobb_canion curvesplus.biobb_curves dna.dna_averages dna.dna_bimodality dna.dna_timeseries interbp_correlations.interbpcorr interbp_correlations.interhpcorr interbp_correlations.interseqcorr intrabp_correlations.intrabpcorr intrabp_correlations.intrahpcorr intrabp_correlations.intraseqcorr stiffness.average_stiffness stiffness.basepair_stiffness

P

Puckering (class in backbone.puckering)

puckering() (in module backbone.puckering)

S

stiffness.average_stiffness module

stiffness.basepair_stiffness module